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1

RNA secondary structures: comparison and determination of frequently recurring substructures by consensus

Le, Shu-Yun, Owens, John, Nussinov, Ruth, Chen, Jih-H., Shapiro, Bruce, Maizel, Jacob V.

Journal:

Year:

1989

Language:

english

File:

PDF, 502 KB

english, 1989

2

Tree graphs of RNA secondary structures and their comparisons

Shu-Yun Le, Ruth Nussinov, Jacob V. Maizel

Journal:

Computers and Biomedical Research

Year:

1989

Language:

english

File:

PDF, 749 KB

english, 1989

3

Data mining of functional RNA structures in genomic sequences

Shu-Yun Le, Bruce A. Shapiro

Journal:

Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery

Year:

2011

Language:

english

File:

PDF, 253 KB

english, 2011

4

[IEEE Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004. - Stanford, CA, USA (16-19 Aug. 2004)] Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004. - An algorithm for detecting homologues of known structured rnas in genomes

Shu-Yun Le,, Maizel, J.V., Kaizhong Zhang,

Year:

2004

Language:

english

File:

PDF, 353 KB

english, 2004

5

Mapping and characterization of the minimal internal ribosome entry segment in the human c-myc mRNA 5′ untranslated region

Cencig, Sabrina, Nanbru, Cécile, Le, Shu-Yun, Gueydan, Cyril, Huez, Georges, Kruys, Véronique

Journal:

Year:

2004

Language:

english

File:

PDF, 259 KB

english, 2004

6

HIV-1 encoded candidate micro-RNAs and their cellular targets

Yamina Bennasser, Shu-Yun Le, Man Lung Yeung, Kuan-Teh Jeang

Journal:

Year:

2004

Language:

english

File:

PDF, 194 KB

english, 2004

7

A highly conserved RNA folding region coincident with the Rev response element of primate immunodeficiency viruses

Le, Shu-Yun, Malim, Michael H., Cullen, Bryan R., Maizel, Jacob V.

Journal:

Nucleic Acids Research

Year:

1990

Language:

english

File:

PDF, 597 KB

english, 1990

8

Sequence signatures and mRNA concentration can explain two-thirds of protein abundance variation in a human cell line

Vogel, Christine, de Sousa Abreu, Raquel, Ko, Daijin, Le, Shu-Yun, Shapiro, Bruce A, Burns, Suzanne C, Sandhu, Devraj, Boutz, Daniel R, Marcotte, Edward M, Penalva, Luiz O

Journal:

Molecular Systems Biology

Year:

2010

Language:

english

File:

PDF, 961 KB

english, 2010

9

The HIV-1 rev trans-activator acts through a structured target sequence to activate nuclear export of unspliced viral mRNA

Malim, Michael H., Hauber, Joachim, Le, Shu-Yun, Maizel, Jacob V., Cullen, Bryan R.

Journal:

Year:

1989

File:

PDF, 509 KB

1989

10

Conserved tertiary structural elements in the 5’ nontranslated region of cardiovirus, aphthovirus and hepatitis A virus RNAs

Le, Shu-Yun, Chen, Jih-H., Sonenberg, Nahum, Maizel, Jacob V.

Journal:

Nucleic Acids Research

Year:

1993

Language:

english

File:

PDF, 651 KB

english, 1993

11

Stability of RNA stem-loop structure and distribution of non-random structure in the human immunodeficiency virus (HIV-I)

Le, Shu-Yun, Chen, Jih-H, Braun, Michael J., Gonda, Matthew A., Maizel, Jacob V.

Journal:

Nucleic Acids Research

Year:

1988

Language:

english

File:

PDF, 615 KB

english, 1988

12

A data mining approach to discover unusual folding regions in genome sequences

Shu-Yun Le, Wei-min Liu, Jacob V. Maizel Jr.

Journal:

Knowledge-Based Systems

Year:

2002

Language:

english

File:

PDF, 155 KB

english, 2002

13

A method for assessing the statistical significance of RNA folding

Shu-Yun Le, Jacob V. Maizel Jr.

Journal:

Journal of Theoretical Biology

Year:

1989

Language:

english

File:

PDF, 751 KB

english, 1989

14

Conserved tertiary structure elements in the 5′ untranslated region of human enteroviruses and rhinoviruses

Shu-Yun Le, Jih-H. Chen, Nahum Sonenberg, Jacob V. Maizel

Journal:

Year:

1992

Language:

english

File:

PDF, 978 KB

english, 1992

15

FINDING CONSERVED WELL-ORDERED RNA STRUCTURES IN GENOMIC SEQUENCES

LE, SHU-YUN, MAIZEL, JACOB V., ZHANG, KAIZHONG

Journal:

International Journal of Computational Intelligence and Applications

Year:

2004

Language:

english

File:

PDF, 292 KB

english, 2004

16

Evidence that HIV-1 Encodes an siRNA and a Suppressor of RNA Silencing

Yamina Bennasser, Shu-Yun Le, Monsef Benkirane, Kuan-Teh Jeang

Journal:

Year:

2005

File:

PDF, 18 KB

2005

17

Stability of a Long Noncoding Viral RNA Depends on a 9-Nt Core Element at the RNA 5' End to Interact with Viral ORF57 and Cellular PABPC1

Massimelli, Maria J., Kang, Jeong-Gu, Majerciak, Vladimir, Le, Shu-Yun, Liewehr, David J., Steinberg, Seth M., Zheng, Zhi-Ming

Journal:

International Journal of Biological Sciences

Year:

2011

Language:

english

File:

PDF, 1.53 MB

english, 2011

18

Local Thermodynamic Stability Scores Are Well Represented by a Non-central Student's t Distribution

SHU-YUN LE, WEI-MIN LIU, JIH-H. CHEN, JACOB V. MAIZEL JR

Journal:

Journal of Theoretical Biology

Year:

2001

Language:

english

File:

PDF, 458 KB

english, 2001

19

Evidence that HIV-1 Encodes an siRNA and a Suppressor of RNA Silencing

Yamina Bennasser, Shu-Yun Le, Monsef Benkirane, Kuan-Teh Jeang

Journal:

Year:

2005

Language:

english

File:

PDF, 901 KB

english, 2005

20

RNA tertiary structure of the HIV RRE domain II containing non-Watson-Crick base pairs GG and GA: molecular modeling studies

Le, Shu-Yun, Pattabiraman, N., Maizel, Jacob V.

Journal:

Nucleic Acids Research

Year:

1994

Language:

english

File:

PDF, 3.27 MB

english, 1994

21

Correction and Clarification: Visna Virus Encodes a Post-Transcriptional Regulator of Viral Structural Gene Expression

Laurence S. Tiley, Pamela H. Brown, Shu-yun Le, Jacob V. Maizel, Janice E. Clements and Bryan R. Cullen

Journal:

Proceedings of the National Academy of Sciences

Year:

1990

Language:

english

File:

PDF, 186 KB

english, 1990

22

Data mining of imperfect double-stranded RNA in untranslated regions of eukaryotic mRNAs

Shu-Yun Le, J.V. Maizel Jr.

Journal:

Biomolecular Engineering

Year:

2007

Language:

english

File:

PDF, 490 KB

english, 2007

23

Speeding up the dynamic algorithm for planar RNA folding

Ruth Nussinov, Bruce Shapiro, Shu-Yun Le, Jacob V. Maizel JR.

Journal:

Mathematical Biosciences

Year:

1990

Language:

english

File:

PDF, 719 KB

english, 1990

24

Sequence divergence and open regions of RNA secondary structures in the envelope regions of the 17 human immunodeficiency virus isolates

Le, Shu-Yun, Chen, Jih-H., Chatterjee, Devjani, Maizel, Jacob V.

Journal:

Nucleic Acids Research

Year:

1989

Language:

english

File:

PDF, 562 KB

english, 1989

25

A Method for Predicting Common Structures of Homologous RNAs

Shu-Yun Le, Kaizhong Zhang, Jacob V. Maizel Jr.

Journal:

Computers and Biomedical Research

Year:

1995

File:

PDF, 436 KB

1995

26

A computational procedure for assessing the significance of RNA secondary structure

Chen, Jih-H., Le, Shu-Yun, Shapiro, Bruce, Currey, Kathleen M., Maizel, Jacob V.

Journal:

Year:

1990

Language:

english

File:

PDF, 800 KB

english, 1990

27

RNA pseudoknots downstream of the frameshift sites of retroviruses

Shu-Yun Le, Bruce A. Shapiro, Jih-H. Chen, Ruth Nussinov, Jacob V. Maizel

Journal:

Genetic Analysis: Biomolecular Engineering

Year:

1991

Language:

english

File:

PDF, 1.15 MB

english, 1991

28

Detection of unusual RNA folding regions in HIV and SIV sequences

Le, Shu-Yun, Chen, Jih-H., Maizel, Jacob V.

Journal:

Year:

1991

Language:

english

File:

PDF, 1.24 MB

english, 1991

29

Differentiation-Induced Internal Translation of c- sis mRNA: Analysis of the cis Elements and Their Differentiation-Linked Binding to the hnRNP C Protein

Sella, Osnat, Gerlitz, Gabi, Le, Shu-Yun, Elroy-Stein, Orna

Journal:

Molecular and Cellular Biology

Year:

1999

Language:

english

File:

PDF, 700 KB

english, 1999

30

Evolution of a Common Structural Core in the Internal Ribosome Entry Sites of Picornavirus

Shu-Yun Le, Jacob V. Maizel

Journal:

Year:

1998

Language:

english

File:

PDF, 186 KB

english, 1998

31

The human endogenous retrovirus K Rev response element coincides with a predicted RNA folding region

YANG, JIN, BOGERD, HAL, LE, SHU-YUN, CULLEN, BRYAN R.

Journal:

Year:

2000

File:

PDF, 1011 KB

2000

32

Distinct Structural Elements and Internal Entry of Ribosomes in mRNA3 Encoded by Infectious Bronchitis Virus

Shu-Yun Le, Nahum Sonenberg, Jacob V. Maizel Jr.

Journal:

Year:

1994

File:

PDF, 344 KB

1994

33

Unusual folding regions and ribosome landing pad within hepatitis C virus and pestivirus RNAs

Shu-Yun Le, Nahum Sonenberg, Jacob V. Maizel Jr.

Journal:

Year:

1995

Language:

english

File:

PDF, 712 KB

english, 1995

34

Visna Virus Encodes a Post-Transcriptional Regulator of Viral Structural Gene Expression

Laurence S. Tiley, Pamela H. Brown, Shu-Yun Le, Jacob V. Maizel, Janice E. Clements and Bryn R. Cullen

Journal:

Proceedings of the National Academy of Sciences

Year:

1990

Language:

english

File:

PDF, 1.13 MB

english, 1990

35

A common structural core in the internal ribosome entry sites of picornavirus, hepatitis C virus, and pestivirus

Shu-Yun Le, Aleem Siddiqui, Jacob V. Maizel

Journal:

Year:

1996

Language:

english

File:

PDF, 896 KB

english, 1996

36

Regulation of vascular endothelial growth factor (VEGF) expression is mediated by internal initiation of translation and alternative initiation of transcription

Akiri, Gal, Nahari, Dorit, Finkelstein, Yiftach, Le, Shu-Yun, Elroy-Stein, Orna, Levi, Ben-Zion

Journal:

Year:

1998

Language:

english

File:

PDF, 512 KB

english, 1998

37

A molecular modeling study of antibiotics–RNA interactions: application to HIV-1 Rev response element

V Pramodh, N Pattabiraman, Shu-Yun Le, Jacob V Maizel Jr

Journal:

Journal of Molecular Structure: THEOCHEM

Year:

1998

Language:

english

File:

PDF, 633 KB

english, 1998

38

Functional Comparison of the Rev Trans-Activators Encoded by Different Primate Immunodeficiency Virus Species

Michael H. Malim, Sabine Böhnlein, Randy Fenrick, Shu-Yun Le, Jacob V. Maizel and Bryan R. Cullen

Journal:

Proceedings of the National Academy of Sciences

Year:

1989

Language:

english

File:

PDF, 1.03 MB

english, 1989

39

Computational Design of an RNA Nanoparticle Consisting of a Three-Way Junction and pre-miRNAs

Le, Shu-Yun, Kim, Taejin, Shapiro, Bruce A.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 81 KB

english, 2010

40

Phylogenetic Evidence for the Improved RNA Higher-Order Structure in Internal Ribosome Entry Sequences of HCV and Pestiviruses

Shu-Yun Le, Wei-Min Liu, Jacob V. Maizel

Journal:

Year:

1998

Language:

english

File:

PDF, 473 KB

english, 1998

41

[IEEE 2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Hong Kong, China (2010.12.18-2010.12.21)] 2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Characterization of structural features for small regulatory RNAs in Escherichia coli genomes

Le, Shu-Yun, Bruce, A. Shapiro

Year:

2010

Language:

english

File:

PDF, 488 KB

english, 2010

42

Predicting Common Foldings of Homologous RNAs

Le, Shu-Yun, Zuker, Michael

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1991

Language:

english

File:

PDF, 703 KB

english, 1991

43

Optimization of an RNA folding algorithm for parallel architectures

Jih-H. Chen, Shu-Yun Le, Bruce A. Shapiro, Jacob V. Maizel

Journal:

Parallel Computing

Year:

1998

Language:

english

File:

PDF, 196 KB

english, 1998

44

Ion-RNA Interactions in the RNA Pseudoknot of a Ribosomal Frameshifting Site: Molecular Modeling Studies

Le, Shu-Yun, Chen, Jih-H., Pattabiraman, N., Maizel, Jacob V.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1998

Language:

english

File:

PDF, 1.73 MB

english, 1998

45

New tirucallane triterpenoids from the dried latex of Euphorbia resinifera

Wang, Shu-Yun, Huang, Chao, Sun, Ren-Kuan, Lu, Li-Na, Liang, Hong-Gang, Gao, Le, Huang, Jian, Wang, Jin-Hui, Yang, Bao-Feng

Journal:

Phytochemistry Letters

Year:

2019

Language:

english

File:

PDF, 1.53 MB

english, 2019

46

Stability of a Long Noncoding Viral RNA Depends on a 9-Nt Core Element at the RNA 5' End to Interact with Viral ORF57 and Cellular PABPC1

Massimelli, Maria J., Kang, Jeong-Gu, Majerciak, Vladimir, Le, Shu-Yun, Liewehr, David J., Steinberg, Seth M., Zheng, Zhi-Ming

Journal:

International Journal of Biological Sciences

Year:

2011

File:

PDF, 1.53 MB

2011

47

A program for predicting significant RNA secondary structures

Le, Shu-yun, Chen, Jih-Hsiang, Currey, Kathleen M., Maizel, Jacob V.

Journal:

Year:

1988

Language:

english

File:

PDF, 513 KB

english, 1988

48

Thermodynamic stability and statistical significance of potential stem-loop structures situated at the frameshift sites of retroviruses

Le, Shu-Yun, Chen, Jih-H., Maizel, Jacob V.

Journal:

Nucleic Acids Research

Year:

1989

Language:

english

File:

PDF, 480 KB

english, 1989

49

Common structures of the 5′ non-coding RNA in enteroviruses and rhinoviruses: Thermodynamical stability and statistical significance

Shu-Yun Le, Michael Zuker

Journal:

Journal of Molecular Biology

Year:

1990

Language:

english

File:

PDF, 1.14 MB

english, 1990

50

Identification of unusual RNA folding patterns encoded by bacteriophage T4 gene 60

Maizel, Jacob V., Shu-Yun, Le, Jih-Hsiang, Chen

Journal:

Year:

1993

Language:

english

File:

PDF, 873 KB

english, 1993

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